Detailed information of SNP:
SNP ID:
sf0722941807(Gbrowse)
Chromosome: chr07 Position: 22941807 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1416 | 50.64% | 49.36% |
All Indica | 797 | 79.17% | 20.83% |
All Japonica | 497 | 0.40% | 99.60% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 96.27% | 3.73% |
Indica II | 213 | 52.58% | 47.42% |
Indica Intermediate | 209 | 75.60% | 24.40% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0722941807 | G->A | LOC_Os07g38260(LOC_Os07g38260.1) | INTRON |