Detailed information of SNP:
|
SNP ID:
sf0722958453(Gbrowse)
Chromosome: chr07 Position: 22958453 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.07% | 49.93% |
| All Indica | 798 | 78.57% | 21.43% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722958453 | C->G | LOC_Os07g38270(LOC_Os07g38270.1) | INTRON |