Detailed information of SNP:
|
SNP ID:
sf0722991023(Gbrowse)
Chromosome: chr07 Position: 22991023 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 91.93% | 8.07% |
| All Indica | 754 | 85.94% | 14.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 98.25% | 1.75% |
| Indica I | 347 | 82.13% | 17.87% |
| Indica II | 200 | 89.50% | 10.50% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722991023 | T->C | INTERGENIC | None |