Detailed information of SNP:
|
SNP ID:
sf0723094862(Gbrowse)
Chromosome: chr07 Position: 23094862 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.09% | 34.91% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 32.60% | 67.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 44.78% | 55.22% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723094862 | A->C | INTERGENIC | None |