Detailed information of SNP:
|
SNP ID:
sf0723176726(Gbrowse)
Chromosome: chr07 Position: 23176726 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 88.20% | 11.80% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 69.84% | 30.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 64.46% | 35.54% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723176726 | G->A | INTERGENIC | None |