Detailed information of SNP:
|
SNP ID:
sf0723182500(Gbrowse)
Chromosome: chr07 Position: 23182500 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 91.66% | 8.34% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 493 | 79.92% | 20.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 78.68% | 21.32% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723182500 | G->A | INTERGENIC | None |