Detailed information of SNP:
|
SNP ID:
sf0723190625(Gbrowse)
Chromosome: chr07 Position: 23190625 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 51.56% | 48.44% |
| All Indica | 788 | 79.44% | 20.56% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 94.58% | 5.42% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 206 | 66.50% | 33.50% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723190625 | A->T | LOC_Os07g38610(LOC_Os07g38610.1) | INTRON |