Detailed information of SNP:
|
SNP ID:
sf0723221813(Gbrowse)
Chromosome: chr07 Position: 23221813 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 93.17% | 6.83% |
| All Indica | 786 | 93.51% | 6.49% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 208 | 86.54% | 13.46% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723221813 | C->T | INTERGENIC | None |