Detailed information of SNP:
|
SNP ID:
sf0723241343(Gbrowse)
Chromosome: chr07 Position: 23241343 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.44% | 47.56% |
| All Indica | 797 | 19.95% | 80.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 5.61% | 94.39% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 210 | 32.38% | 67.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723241343 | A->G | INTERGENIC | None |