Detailed information of SNP:
|
SNP ID:
sf0723242821(Gbrowse)
Chromosome: chr07 Position: 23242821 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1264 | 97.23% | 2.77% |
| All Indica | 750 | 97.73% | 2.27% |
| All Japonica | 397 | 95.97% | 4.03% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 97.82% | 2.18% |
| Indica II | 204 | 97.06% | 2.94% |
| Indica Intermediate | 179 | 98.32% | 1.68% |
| Temperate Japonica | 301 | 96.35% | 3.65% |
| Tropical Japonica | 52 | 94.23% | 5.77% |
| Japonica Intermediate | 44 | 95.45% | 4.55% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723242821 | G->A | LOC_Os07g38730(LOC_Os07g38730.1) | UTR_5_PRIME |