Detailed information of SNP:
|
SNP ID:
sf0723277276(Gbrowse)
Chromosome: chr07 Position: 23277276 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 64.02% | 35.98% |
| All Indica | 791 | 85.59% | 14.41% |
| All Japonica | 495 | 35.76% | 64.24% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 206 | 78.64% | 21.36% |
| Temperate Japonica | 335 | 26.57% | 73.43% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723277276 | T->A | INTERGENIC | None |