Detailed information of SNP:
|
SNP ID:
sf0723279526(Gbrowse)
Chromosome: chr07 Position: 23279526 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.56% | 46.44% |
| All Indica | 799 | 21.90% | 78.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 5.87% | 94.13% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723279526 | C->T | LOC_Os07g38800(LOC_Os07g38800.1) | Synonymous |