Detailed information of SNP:
|
SNP ID:
sf0723285277(Gbrowse)
Chromosome: chr07 Position: 23285277 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 56.81% | 43.19% |
| All Indica | 794 | 87.53% | 12.47% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723285277 | C->T | INTERGENIC | None |