Detailed information of SNP:
|
SNP ID:
sf0723309254(Gbrowse)
Chromosome: chr07 Position: 23309254 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 83.16% | 16.84% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 491 | 54.79% | 45.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 40.96% | 59.04% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723309254 | A->T | INTERGENIC | None |