Detailed information of SNP:
|
SNP ID:
sf0723321951(Gbrowse)
Chromosome: chr07 Position: 23321951 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.44% | 28.56% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 31.59% | 68.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723321951 | C->T | LOC_Os07g38870(LOC_Os07g38870.1) | Non-Synonymous SNP |