Detailed information of SNP:
|
SNP ID:
sf0723322156(Gbrowse)
Chromosome: chr07 Position: 23322156 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 84.11% | 15.89% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 488 | 75.61% | 24.39% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 334 | 85.63% | 14.37% |
| Tropical Japonica | 89 | 51.69% | 48.31% |
| Japonica Intermediate | 65 | 56.92% | 43.08% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723322156 | A->C | INTERGENIC | None |