Detailed information of SNP:
|
SNP ID:
sf0723324807(Gbrowse)
Chromosome: chr07 Position: 23324807 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 67.40% | 32.60% |
| All Indica | 797 | 88.46% | 11.54% |
| All Japonica | 497 | 29.78% | 70.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723324807 | G->A | LOC_Os07g38890(LOC_Os07g38890.1) | Non-Synonymous SNP |