Detailed information of SNP:
|
SNP ID:
sf0723325018(Gbrowse)
Chromosome: chr07 Position: 23325018 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 71.83% | 28.17% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 493 | 31.85% | 68.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 332 | 15.66% | 84.34% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723325018 | C->T | LOC_Os07g38890(LOC_Os07g38890.1) | Non-Synonymous SNP |