Detailed information of SNP:
|
SNP ID:
sf0723336158(Gbrowse)
Chromosome: chr07 Position: 23336158 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 90.86% | 9.14% |
| All Indica | 757 | 90.22% | 9.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 25.81% | 74.19% |
| Indica I | 351 | 90.03% | 9.97% |
| Indica II | 201 | 85.57% | 14.43% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723336158 | C->T | INTERGENIC | None |