Detailed information of SNP:
|
SNP ID:
sf0723339892(Gbrowse)
Chromosome: chr07 Position: 23339892 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 70.85% | 29.15% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 31.59% | 68.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723339892 | T->C | INTERGENIC | None |