Detailed information of SNP:
|
SNP ID:
sf0723387093(Gbrowse)
Chromosome: chr07 Position: 23387093 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.24% | 28.76% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 493 | 34.69% | 65.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 333 | 16.22% | 83.78% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723387093 | A->C | INTERGENIC | None |