Detailed information of SNP:
|
SNP ID:
sf0723408851(Gbrowse)
Chromosome: chr07 Position: 23408851 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.23% | 30.77% |
| All Indica | 797 | 88.58% | 11.42% |
| All Japonica | 497 | 34.21% | 65.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 16.42% | 83.58% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723408851 | T->C | INTERGENIC | None |