Detailed information of SNP:
|
SNP ID:
sf0723473338(Gbrowse)
Chromosome: chr07 Position: 23473338 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 71.13% | 28.87% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 492 | 33.13% | 66.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 16.12% | 83.88% |
| Tropical Japonica | 89 | 74.16% | 25.84% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723473338 | A->G | INTERGENIC | None |