Detailed information of SNP:
|
SNP ID:
sf0723500943(Gbrowse)
Chromosome: chr07 Position: 23500943 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 57.81% | 42.19% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 494 | 9.31% | 90.69% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723500943 | G->C | INTERGENIC | None |