Detailed information of SNP:
|
SNP ID:
sf0723508978(Gbrowse)
Chromosome: chr07 Position: 23508978 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 85.65% | 14.35% |
| All Indica | 790 | 94.56% | 5.44% |
| All Japonica | 493 | 79.31% | 20.69% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 334 | 86.83% | 13.17% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723508978 | A->T | INTERGENIC | None |