Detailed information of SNP:
|
SNP ID:
sf0723515711(Gbrowse)
Chromosome: chr07 Position: 23515711 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 66.74% | 33.26% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723515711 | G->T | INTERGENIC | None |