Detailed information of SNP:
|
SNP ID:
sf0723546705(Gbrowse)
Chromosome: chr07 Position: 23546705 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.96% | 36.04% |
| All Indica | 797 | 91.72% | 8.28% |
| All Japonica | 495 | 16.16% | 83.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 333 | 13.21% | 86.79% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723546705 | A->C | INTERGENIC | None |