Detailed information of SNP:
|
SNP ID:
sf0723550240(Gbrowse)
Chromosome: chr07 Position: 23550240 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 78.92% | 21.08% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 448 | 48.21% | 51.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 314 | 31.53% | 68.47% |
| Tropical Japonica | 74 | 94.59% | 5.41% |
| Japonica Intermediate | 60 | 78.33% | 21.67% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723550240 | T->C | INTERGENIC | None |