Detailed information of SNP:
SNP ID:
sf0723579067(Gbrowse)
Chromosome: chr07 Position: 23579067 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 54.98% | 45.02% |
All Indica | 798 | 85.71% | 14.29% |
All Japonica | 497 | 0.20% | 99.80% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 94.40% | 5.60% |
Indica II | 212 | 87.26% | 12.74% |
Indica Intermediate | 211 | 68.72% | 31.28% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0723579067 | T->C | INTERGENIC | None |