Detailed information of SNP:
|
SNP ID:
sf0723594944(Gbrowse)
Chromosome: chr07 Position: 23594944 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 95.36% | 4.64% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 52 | 50.00% | 50.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723594944 | C->T | INTERGENIC | None |