Detailed information of SNP:
|
SNP ID:
sf0723647379(Gbrowse)
Chromosome: chr07 Position: 23647379 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.09% | 36.91% |
| All Indica | 798 | 90.73% | 9.27% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723647379 | G->A | INTERGENIC | None |