Detailed information of SNP:
|
SNP ID:
sf0723663040(Gbrowse)
Chromosome: chr07 Position: 23663040 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.81% | 37.19% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 496 | 21.77% | 78.23% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723663040 | A->C | INTERGENIC | None |