Detailed information of SNP:
|
SNP ID:
sf0723664627(Gbrowse)
Chromosome: chr07 Position: 23664627 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 89.53% | 10.47% |
| All Indica | 797 | 95.61% | 4.39% |
| All Japonica | 494 | 79.55% | 20.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 333 | 86.79% | 13.21% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723664627 | C->G | LOC_Os07g39490(LOC_Os07g39490.1) | Non-Synonymous SNP |