Detailed information of SNP:
|
SNP ID:
sf0723710500(Gbrowse)
Chromosome: chr07 Position: 23710500 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 50.36% | 49.64% |
| All Indica | 792 | 78.79% | 21.21% |
| All Japonica | 474 | 5.06% | 94.94% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 207 | 56.52% | 43.48% |
| Temperate Japonica | 324 | 5.86% | 94.14% |
| Tropical Japonica | 85 | 0.00% | 100.00% |
| Japonica Intermediate | 65 | 7.69% | 92.31% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723710500 | G->A | INTERGENIC | None |