Detailed information of SNP:
|
SNP ID:
sf0723740541(Gbrowse)
Chromosome: chr07 Position: 23740541 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 89.55% | 10.45% |
| All Indica | 785 | 94.14% | 5.86% |
| All Japonica | 483 | 80.54% | 19.46% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 366 | 97.27% | 2.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 324 | 88.58% | 11.42% |
| Tropical Japonica | 92 | 51.09% | 48.91% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723740541 | C->T | INTERGENIC | None |