Detailed information of SNP:
|
SNP ID:
sf0723790688(Gbrowse)
Chromosome: chr07 Position: 23790688 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 79.99% | 20.01% |
| All Indica | 799 | 69.46% | 30.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723790688 | T->C | INTERGENIC | None |