Detailed information of SNP:
|
SNP ID:
sf0723826170(Gbrowse)
Chromosome: chr07 Position: 23826170 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 97.95% | 2.05% |
| All Indica | 755 | 96.95% | 3.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 179 | 92.74% | 7.26% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723826170 | C->T | LOC_Os07g39770(LOC_Os07g39770.1) | Non-Synonymous SNP |