Detailed information of SNP:
|
SNP ID:
sf0723830797(Gbrowse)
Chromosome: chr07 Position: 23830797 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 89.28% | 10.72% |
| All Indica | 793 | 97.98% | 2.02% |
| All Japonica | 466 | 72.10% | 27.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 310 | 60.97% | 39.03% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723830797 | A->G | INTERGENIC | None |