Detailed information of SNP:
|
SNP ID:
sf0723870945(Gbrowse)
Chromosome: chr07 Position: 23870945 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.08% | 44.92% |
| All Indica | 799 | 27.16% | 72.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 12.53% | 87.47% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723870945 | A->G | INTERGENIC | None |