Detailed information of SNP:
|
SNP ID:
sf0723902184(Gbrowse)
Chromosome: chr07 Position: 23902184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 98.26% | 1.74% |
| All Indica | 792 | 99.62% | 0.38% |
| All Japonica | 467 | 95.50% | 4.50% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 94.10% | 5.90% |
| Tropical Japonica | 83 | 98.80% | 1.20% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723902184 | G->A | LOC_Os07g39860(LOC_Os07g39860.1) | Non-Synonymous SNP |