Detailed information of SNP:
|
SNP ID:
sf0723914711(Gbrowse)
Chromosome: chr07 Position: 23914711 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.57% | 44.43% |
| All Indica | 798 | 25.69% | 74.31% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 210 | 47.14% | 52.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723914711 | C->T | INTERGENIC | None |