Detailed information of SNP:
|
SNP ID:
sf0723950276(Gbrowse)
Chromosome: chr07 Position: 23950276 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 51.42% | 48.58% |
| All Indica | 793 | 85.12% | 14.88% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 371 | 85.44% | 14.56% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723950276 | T->C | INTERGENIC | None |