Detailed information of SNP:
|
SNP ID:
sf0723952221(Gbrowse)
Chromosome: chr07 Position: 23952221 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.66% | 45.34% |
| All Indica | 797 | 90.09% | 9.91% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723952221 | C->A | INTERGENIC | None |