Detailed information of SNP:
|
SNP ID:
sf0723988335(Gbrowse)
Chromosome: chr07 Position: 23988335 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.11% | 41.89% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723988335 | A->C | LOC_Os07g39980(LOC_Os07g39980.1) | INTRON |