Detailed information of SNP:
|
SNP ID:
sf0723990129(Gbrowse)
Chromosome: chr07 Position: 23990129 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 797 | 26.22% | 73.78% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723990129 | G->A | INTERGENIC | None |