Detailed information of SNP:
|
SNP ID:
sf0723990320(Gbrowse)
Chromosome: chr07 Position: 23990320 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.72% | 47.28% |
| All Indica | 798 | 26.19% | 73.81% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 12.27% | 87.73% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0723990320 | A->G | INTERGENIC | None |