Detailed information of SNP:
|
SNP ID:
sf0724003860(Gbrowse)
Chromosome: chr07 Position: 24003860 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1249 | 96.24% | 3.76% |
| All Indica | 638 | 92.79% | 7.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 292 | 92.47% | 7.53% |
| Indica II | 168 | 95.83% | 4.17% |
| Indica Intermediate | 178 | 90.45% | 9.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724003860 | T->A | INTERGENIC | None |