Detailed information of SNP:
|
SNP ID:
sf0724011281(Gbrowse)
Chromosome: chr07 Position: 24011281 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 58.19% | 41.81% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724011281 | C->A | INTERGENIC | None |