Detailed information of SNP:
|
SNP ID:
sf0724064646(Gbrowse)
Chromosome: chr07 Position: 24064646 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 73.88% | 26.12% |
| All Indica | 786 | 53.94% | 46.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 367 | 23.43% | 76.57% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 207 | 71.50% | 28.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724064646 | A->G | INTERGENIC | None |