Detailed information of SNP:
|
SNP ID:
sf0724067098(Gbrowse)
Chromosome: chr07 Position: 24067098 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.26% | 36.74% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 496 | 10.28% | 89.72% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724067098 | T->C | INTERGENIC | None |